EPJ Web Conf.
Volume 226, 2020Mathematical Modeling and Computational Physics 2019 (MMCP 2019)
|Number of page(s)||4|
|Section||Mathematical and Computational Support of the Experiments, Computing Tools, and Software Services|
|Published online||20 January 2020|
System for Automatic Processing and Analysis of MRI/fMRI Data on the Kurchatov Institute Supercomputer
Department of Neurocognitive Sciences, National Research Center «Kurchatov Institute»,
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Published online: 20 January 2020
This paper presents the Computer Model of the System for Automatic Processing and Analysis of MRI/fMRI tomography data, obtained at the Kurchatov Institute Resource Center “Cognimed”. The System is based on the “Digital Lab” IT-Platform, involving the Kurchatov Institute Supercomputer Cluster HPC4, which allows speeding up the processing of data for groups (2–350 subjects) by parallelization of computations on the supercomputer nodes (1 subject – 1 node). The proposed System allows scientists to remotely use the installed on the supercomputer specialized software to process and analyze MRI/fMRI data; organizes a unified data storage; permits the work with data by web a interface. The System also enables the use of program modules developed by KI researchers which implement mathematical methods to improve data analysis results. As an example of the realization of this Computer Model, the Module “MRI FS” is presented that provides automatic processing and analysis of MRI data using the open specialized software FreeSurfer v.6.0.
© The Authors, published by EDP Sciences, 2020
This is an Open Access article distributed under the terms of the Creative Commons Attribution License 4.0, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
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